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Job Title


Snakemake Expert for Molecular Dynamics Automation


Company : U: The Mind Company


Location : Jodhpur, Rajasthan


Created : 2025-08-01


Job Type : Full Time


Job Description

U: The Mind Companyis looking for aBioinformatics Workflow Specialistto revolutionize our molecular dynamics simulation pipeline using Snakemake automation. The Challenge:We've automated 80% of our MD simulation workflow but need an expert to tackle the critical docking automation bottleneck. You'll be the key person who unlocks our entire computational pipeline. Initial Information: What You'll Do: Design & implement Snakemake workflows for automated protein-ligand docking Automate PDB file processing and MOL2 conversion pipelines Create robust error handling for GROMACS simulation workflows Optimize computational efficiency across cloud and local systems Collaborate with our neuroscience team on brain-drug interaction simulations Required Skills: Expert-level Snakemake experience(2+ years preferred) Python scripting for bioinformatics workflows Molecular dynamics simulation knowledge (GROMACS, AutoDock) Experience with PDB/MOL2 file formats and topology generation Linux/Unix command line proficiency Bonus Points: Previous biotech/pharma workflow automation Docker/Singularity containerization AWS/cloud computing for MD simulations Experience with neuroscience applications What We Offer: Direct impact on breakthrough neurotechnology for Parkinson's/Alzheimer's Work with cutting-edge AI-powered brain stimulation research Immediate project ownership and technical leadership Ready to automate the future of neuroscience research? Apply now with your Snakemake portfolio and let's discuss how your workflow expertise can accelerate life-changing treatments. #Bioinformatics #Snakemake #MolecularDynamics #Neuroscience #RemoteWork #TechJobs